Pathogens: Difference between revisions
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The ICD10 | The [[ICD10 Diagnosis List]] contains specific codes for a number of different bacteria, viruses, fungi/yeast, mycobacteria and miscellaneous types of organisms. The entire list can be found in category and subcategories: | ||
{{ | {{subcat collapsible|supercategory = Pathogens}} | ||
Pathogens are coded as their own diagnosis codes: | Pathogens are coded as their own diagnosis codes: | ||
{{ListICD10Category | categoryName = Pathogens}} | {{ListICD10Category | categoryName = Pathogens}} | ||
They are always entered as [[Combined ICD10 codes]] with an [[Infections in ICD10|infection]], but not all infections require pathogens. See [[Infections in ICD10]] for more info. | They are always entered as [[Combined ICD10 codes]] with an [[Infections in ICD10|infection]], but not all infections require pathogens. See [[Template:ICD10 Guideline Infection]], [[Infections in ICD10]] for more info. | ||
Information about pathogens can be found in the patient's chart's [[Lab and culture reports]]; see that page for specific use instructions. | |||
== | == NOS pathogens == | ||
*In each of those categories there are a number of specific bugs with their own codes (e.g. B95.3 is Strep pneumoniae) | *In each of those categories there are a number of specific bugs with their own codes (e.g. B95.3 is Strep pneumoniae) | ||
*But obviously we can't list every bug of any type, so for each of those categories there is also a "wastebasket" code for "NOS". For example, if the bug is a specific bacteria but it's not in our list, then use [[Bacteria, NOS]], etc. These are: | *But obviously we can't list every bug of any type, so for each of those categories there is also a "wastebasket" code for "NOS". For example, if the bug is a specific bacteria but it's not in our list, then use [[Bacteria, NOS]], etc. These are: | ||
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**[[Fungus or yeast, NOS]] | **[[Fungus or yeast, NOS]] | ||
**[[Nontuberculous mycobacteria]] | **[[Nontuberculous mycobacteria]] | ||
**[[Other type of infectious organism, NOS]] | **[[Other type of infectious organism, NOS]] | ||
=== NOS vs Unknown in the context of pathogens === | |||
*We must distinguish '''NOS''' from '''unknown'''. | |||
**''NOS'' means that we do know the bug, but it's not in our list of specific pathogens | |||
**''[[Infectious organism, unknown]]'' means we assume that there IS in fact a pathogen, but we have no idea about it's actual identity. | |||
=== Special Codes === | === Special Codes === | ||
* [[Not an Infection (ICD10 pathogen alternative)]] - included for cross | * [[Not an Infection (ICD10 pathogen alternative)]] - included for [[cross check]]s when entering [[:Category:Potential infection]]s | ||
* [[Infectious organism, unknown]] - eg for negative culture | |||
{{Data Integrity Check List}} | |||
== Related Articles == | == Related Articles == | ||
{{Related Articles}} | {{Related Articles}} | ||
[[Category: ICD10 | [[Category:ICD10]] | ||
[[Category:Pathogens| *]] | |||
[[Category: Pathogens| * | [[Category:Infectious disease| *]] | ||
[[Category: | |||
Latest revision as of 11:56, 30 July 2025
The ICD10 Diagnosis List contains specific codes for a number of different bacteria, viruses, fungi/yeast, mycobacteria and miscellaneous types of organisms. The entire list can be found in category and subcategories:
Pathogens are coded as their own diagnosis codes:
They are always entered as Combined ICD10 codes with an infection, but not all infections require pathogens. See Template:ICD10 Guideline Infection, Infections in ICD10 for more info.
Information about pathogens can be found in the patient's chart's Lab and culture reports; see that page for specific use instructions.
NOS pathogens
- In each of those categories there are a number of specific bugs with their own codes (e.g. B95.3 is Strep pneumoniae)
- But obviously we can't list every bug of any type, so for each of those categories there is also a "wastebasket" code for "NOS". For example, if the bug is a specific bacteria but it's not in our list, then use Bacteria, NOS, etc. These are:
NOS vs Unknown in the context of pathogens
- We must distinguish NOS from unknown.
- NOS means that we do know the bug, but it's not in our list of specific pathogens
- Infectious organism, unknown means we assume that there IS in fact a pathogen, but we have no idea about it's actual identity.
Special Codes
- Not an Infection (ICD10 pathogen alternative) - included for cross checks when entering Category:Potential infections
- Infectious organism, unknown - eg for negative culture
Data Integrity Checks (automatic list)
| App | Status | |
|---|---|---|
| Query check ICD10 Inf Potential Infection must have pathogen or alt | CCMDB.accdb | declined |
| Check Inf Antibiotic resistance must have pathogen or Infection with implied pathogen | CCMDB.accdb | implemented |
| Check Inf Infection with implied pathogen must not have a pathogen combined code | CCMDB.accdb | implemented |
| Query check ICD10 Inf Infection req Pathogen must have one | CCMDB.accdb | implemented |
| Query Check Inf Pathogens must have Infection requiring pathogen or Potential Infection | CCMDB.accdb | implemented |